rs49295692 SNP Detail

Summary

• ID
  rs49295692
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161079938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAACTA AAGCGAGTTT
  ATGTAAGTTA AGTGAGGCTA CCTGGAGGTC AGCTTCAGAT TGTGTGGCCC AGCCTGGGGA
  AGCCTGCAGG ACAGTAGACT ACTTAGAACA TGGCAGGTGC TCTCAGAGTG GTAGCTATTA
  TTAGATGACA CAATTCACGC AGTAACTCTC ACTTTCCTTA TTGCTAGCTA GACACCGTGC
  S
  AGGCCTGATG TGAGACATAG TCCCAGCTCT TACAGGAAAA GTGCAGTTAT GATATCATGT
  AAGGTGATAT GGACAGGGGA GCTGTGAGTG TTTGTTGTTC GGTGTGAGGA ATCCTCTGGA
  ACAGACTCAA CGGATTTAAA GGAAAGCGTG TGGCGGTGCT GAGTGCAGCG ACCCACTGTA
  CCCTGCGTTT TCATCATGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145910382	ENSMUSSNP1047568	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49295692					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161079938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	938 bp distal
Gm70781	predicted gene, 70781	within coordinates
Prdx6	peroxiredoxin 6	1158 bp upstream
Rr372334	regulatory region 372334	1646 bp downstream
Rr396460	regulatory region 396460	1019 bp downstream
Rr396461	regulatory region 396461	557 bp downstream
Rr421776	regulatory region 421776	1616 bp distal
Rr421777	regulatory region 421777	1214 bp distal
Rr421778	regulatory region 421778	659 bp distal
Rr421779	regulatory region 421779	342 bp proximal
Rr421780	regulatory region 421780	1727 bp proximal
Tssr14577	transcription start site region 14577	1459 bp upstream
Tssr14578	transcription start site region 14578	1229 bp upstream
Tssr14579	transcription start site region 14579	1224 bp upstream
Tssr14580	transcription start site region 14580	1182 bp upstream
Tssr14581	transcription start site region 14581	840 bp upstream