rs49295824 SNP Detail

Summary

• ID
  rs49295824
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64995874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCGGTGCG TGGGAAGAAC
  CCCGGCGACC CCGGGGAGCT CCGGGGATGC GTCATCCCGT CCCCCTCCCC GCCCAAGGCC
  GCCGTGAGGA GGATGCTCAC CGCGGCTCTG GTCCCTTCTC CCCTGCGGCC TGCAGCCGAC
  CCCCGGCAGG ACCCCGACCC GGGCAGCCCG CCCTCCTCAC CGCCAGCGAC TGCGCTCCAG
  M
  TGCCGACCAT CCCGGCCCGG CTCTGTTTAC AAGCGGCTTC TCGCGGTCCC ACGCCCAAAA
  GCTTCCCCGC GGCAGCCCGG CAACAGGATC CGATTACACA GAGTTCCAGC CGGTGAGGAC
  CGGTCCCTCC TACGGGAGGA GCAGGCGGTC GGGCGGGGCC TGACCTCCTT ATCTTATTGT
  TTGCTTTACA GCCTTTATCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60745014	NES16383974	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49295824					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60745014	NES16383974	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64995874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi329	CpG island 329	within coordinates
Gm51627	predicted gene, 51627	within coordinates
Plekhm3	pleckstrin homology domain containing, family M, member 3	within coordinates
Rr412356	regulatory region 412356	203 bp distal
Rr412357	regulatory region 412357	within coordinates
Rr412358	regulatory region 412358	30 bp proximal
Rr412359	regulatory region 412359	99 bp proximal
Tssr11945	transcription start site region 11945	within coordinates
Tssr11946	transcription start site region 11946	16 bp downstream
Tssr11947	transcription start site region 11947	92 bp downstream
Tssr11948	transcription start site region 11948	108 bp downstream