rs49296028 SNP Detail

Summary

• ID
  rs49296028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52392792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCTCAG GTTGTATTCA
  CTATAATCTC CATACCGGAC TGTACATTTT AGTCTATGGA AAAAGATTTC AGCTCTATGG
  ATAGATATTT TCTGCCTCTG AGTCAAGCTA GCACAAAGGA AGATTGTTCA GAACTGGCTG
  CCTTGAAAAA CAGGCTTGTT CACAAGTGTA TTGTGGCAGC AGAGACATCC TTTAGTGAAG
  Y
  AATCTCCAAT GACATACATA ATTGCTGTTT GAATATAGAC AACGCCGTAC TTGCTGTCAT
  AGCCTCAATA ACTAGCTCTA TAAAAACAAA CCAATCAACA TGAAACACCA TAATATTTTC
  CTGATTATTA TGTTTCTTTA GCCTTTATAT TGGCTTGTTT TTGTACAGTG TTTCCTTGCC
  AGCTTGCTCT TCAAAAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52300056	NES15306604	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	C		C
ss323303670	CHEV_10_52236502	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49296028					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52300056	NES15306604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52392792 () rs orientation: forward

Symbol	Name	Function Class
Gm47609	predicted gene, 47609	1919 bp upstream
Gm47610	predicted gene, 47610	1597 bp downstream
Gm65895	predicted gene, 65895	within coordinates