rs49296439 SNP Detail

Summary

• ID
  rs49296439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96182331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC TTTTCACCTA GACATGGGGT
  R
  CTGGTTTTTA ATATTTATTC GTTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132676632	ENSMUSSNP4715542	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49296439					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96182331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3638	CpG island 3638	1883 bp distal
Cpgi3639	CpG island 3639	1797 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	1316 bp upstream
Hoxb7	homeobox B7	1343 bp downstream
Rr386515	regulatory region 386515	within coordinates
Rr455356	regulatory region 455356	481 bp proximal
Rr455357	regulatory region 455357	982 bp proximal
Rr455358	regulatory region 455358	1902 bp proximal
Tssr104478	transcription start site region 104478	648 bp upstream
Tssr104479	transcription start site region 104479	948 bp upstream
Tssr110325	transcription start site region 110325	1977 bp upstream