rs49296826 SNP Detail

Summary

• ID
  rs49296826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137040509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGGGCC TAGCAAACAC
  AGAAGTGGAT GCTCACAGTC AGCTATTGGA TGGATCACAG GGCCCCAAAT GGAGGAGCTT
  GAGAAAGTAC CCAAGGAGCT AAAGAGATCT GCAACCCTGT AGGTGCAACA ACATTATGAA
  CTAACCAGTA CCCCGGAGCT CTTGACTCTA GCTGCATATG TATCAAAAGA TGGCCTAGTA
  R
  GCCATCACTG GAAAGAGAGG CCCATTGGGC ATGCAAACTT TATATGCCCC AGTACAGGGG
  AACCCCAGGG CCAAAAAGTG GGAATGGGTG GGTAGAGGAG TGGGGTGGAG GGTATGGGCA
  ACTTTTGGGA TAGCATTGGA AATGTAATTG AGGAAAATAC CTAATTAAAA AAAAAAAGTG
  AAGTGTGTTC TGACCAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	QSi3/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss359882452	MGP_WTSI_3_136997712	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	QSi3/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs49296826					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359882452	MGP_WTSI_3_136997712	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137040509 () rs orientation: forward

Symbol	Name	Function Class
Tssr35852	transcription start site region 35852	1379 bp downstream