rs49297343 SNP Detail

Summary

• ID
  rs49297343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152462097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC CGCTGAGAAA AGCATGGAAA
  Y
  GCTTTGTACT ACTCCTGAGG ATTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147969823	ENSMUSSNP2437443	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320562577	CHEV_2_152445913	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49297343					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152462097 () rs orientation: forward

Symbol	Name	Function Class
Rr567404	regulatory region 567404	562 bp proximal
Tssr26844	transcription start site region 26844	1938 bp downstream
Tssr26845	transcription start site region 26845	1948 bp downstream