rs49297560 SNP Detail

Summary

• ID
  rs49297560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGACATC TGCTCCAGGC
  CATCGCCGAG CATGCTGTGG CCACCCACCT GCCAGACATA GGTGCCGCAT GGGTCACAGC
  CATATGTGGC TGTCAAGGTA GACCTGGCCA CCAAGACAGA TGTGGCTACG ATATAGGTGG
  GCTACCTGGG ACCCTAGGGG TGAGATGTGA ATCAAATAGT CTCATATGGC CAGTGTCATA
  R
  CGGGAGCCCT GGAGGGCTGG CGCTGGGACT GAGGGGCGGC TGGCCCTTCA GAGCTTCCAG
  GTCAAATTGC TAAAGGGGGA ACTTGTCTGC GTAGACACAG ATTGAGGTGC GTGAGGCTCA
  CCTCACTCCA TCCCTCGGGG ACAAGGTAGG CTGCAAAAGT GAGGCGAGGG GCTGTTGTCT
  GGGAGAGTCA CTCATTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736023	ENSMUSSNP3194685	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49297560					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149532 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	381 bp distal
Gm70184	predicted gene, 70184	1162 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40052	transcription start site region 40052	1984 bp downstream
Tssr40053	transcription start site region 40053	1423 bp downstream
Tssr40054	transcription start site region 40054	545 bp downstream
Tssr40055	transcription start site region 40055	532 bp downstream
Tssr40056	transcription start site region 40056	511 bp downstream
Tssr40057	transcription start site region 40057	450 bp downstream
Tssr40058	transcription start site region 40058	423 bp downstream
Tssr40059	transcription start site region 40059	399 bp downstream
Tssr40060	transcription start site region 40060	339 bp downstream
Tssr40061	transcription start site region 40061	329 bp downstream
Tssr40062	transcription start site region 40062	287 bp upstream
Tssr40063	transcription start site region 40063	1775 bp upstream
Tssr40064	transcription start site region 40064	1835 bp upstream
Tssr40065	transcription start site region 40065	1850 bp upstream
Tssr40066	transcription start site region 40066	1979 bp upstream
Tssr44314	transcription start site region 44314	402 bp downstream
Tssr44315	transcription start site region 44315	1813 bp downstream
Tssr44316	transcription start site region 44316	1896 bp downstream
Tssr44317	transcription start site region 44317	1954 bp downstream