rs49297713 SNP Detail

Summary

• ID
  rs49297713
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91457329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGACCTG TCCCCTCTCT
  TGTAGTACTT GACATCTCAT AAGCCTTCTC ATCCTTTGCC AGAGGGCTAA GATTGTGACG
  TTTCTGAAGG CCTGTATGTG TACCCGTCTC TGCATCTTGG GGGATATACA AATTAAGCCC
  TGATCTTCTT TGATATTTTA AGAGCGTACA GAAGCAGGAT TCCTAGTTGT CTCCTGGTGC
  R
  ATTTATAAGT TTCCCCCAGT TGTCTCCCAG CTGTGGTTTG TAAGTTTCCT AGGATTGTAG
  AGTCACACTT AGGGATTTGA CCTTAAAGAT TCAGCTGACA TTAATCTGTG CTTAGGGGAA
  ATGTGTAGAA GTACCATGGC GGTGTGCCTG TGTGTGCCTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGAGAG AGAGAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60766613	NES16399434	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49297713					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60766613	NES16399434	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91457329 () rs orientation: forward

Symbol	Name	Function Class
Rr23655	regulatory region 23655	1729 bp distal
Rr35283	regulatory region 35283	273 bp proximal
Traf3ip1	TRAF3 interacting protein 1	300 bp downstream
Tssr8094	transcription start site region 8094	1571 bp downstream