rs49298833 SNP Detail

Summary

• ID
  rs49298833
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161344305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTGCCTTC ATCCTATGCC CCACCTGTCG
  TGCTTTACTT ACGAGCTGTC GATTGGAGCC CAGCTGTAAA ACTGTCTGGC CACATCTCTC
  CTCTCTGTGC CCTTCTTTAT CATTCACTGG AGAGAGGCGC CAGTGCAGCA TCAGGAATCC
  W
  GTATAGACTC TCTCAGCACT CTCTCCTCTC TGCCTCCCCC AGTTGTATTT CAGTGTATCC
  TTCCTGACTC TCAAAACCAT TTATACAATC AGCCTTCCAC AAATACAGGG ATTATGGCTA
  ATGACTCTTT TCAGAAGTTA CTTTTGTGAT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60336265	NES15835596	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	T	T	T	T	T		T	T	T	T		A
ss320080967	CHEV_1_163446867	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49298833					SNP	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336265	NES15835596	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161344305 () rs orientation: forward

Symbol	Name	Function Class
Gm31815	predicted gene, 31815	within coordinates
Rr421813	regulatory region 421813	603 bp proximal