rs49299289 SNP Detail

Summary

• ID
  rs49299289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39767285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGGAAAC AGGGGTGATG
  GTAACAGCCT GAATTCCCGC TCATAAGCCT GGAGCAGCTT TGGAGTTTTA AAAAAGGGCT
  AGAATCCCAA GGATAAAAGG GCAGAAAAGC TCCTTAGCTC AATCCTGTTT ATTCTTCATC
  TAAGCGCACC CTTTGATGTA GACACAGACA TTTCTTCCAG TGGGGAAGAA AAGAAAAGAA
  R
  AAAGGCCACA GGCTTAATTT TGTAATGGTA ATTACTGTGT AAAGTAAAAA GAGCAAAAAG
  ACTTTCAGTC CATCAGGGTA AAACATGCCA TCTGAAGCAT GTGTTGACTC TATTTATAGA
  TTGCGTGAGG GTCTCCATCT TATGTGCCCT ACACAGAAAG CAGCTATGAG AATTTAAACA
  GGCTTTGAAT ATTCTTTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134853019	ENSMUSSNP2757735	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49299289					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39767285 () rs orientation: forward

Symbol	Name	Function Class
Gm46834	predicted gene, 46834	94 bp upstream
Rr575767	regulatory region 575767	within coordinates
Rr575768	regulatory region 575768	105 bp proximal
Rr575769	regulatory region 575769	980 bp proximal