rs49299603 SNP Detail

Summary

• ID
  rs49299603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:9230547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGCATC ATCTGTGTGT
  CCTGGAGGAG AAGTGGGCGA GACTGGGTTT CTTAGAGAAT TGCATCCTGT TTACATCGGA
  GGTTTCCAGA CCATGTATGT ATACATGTGC AATATAAGCA CAGCTTTACA TATTTTACTC
  ATTGCAAGGG CTAGCATTTG GGGCATTTCT AACTCACCAG AGAGACAGGT TAGACTCTGC
  R
  GAACTCCAGC TGCCTCTCCA TCTCAGCCAA GCATGGCGGG CAGAGCTGCT GTTTACCCTC
  CACTGTGCAG AGAAGGGCAG GAAGCAACAG TGCCTCTGCT GCTGCTGTTC GTTTTCATTG
  TTCACTATTG AATAACGTGT TGTATCTGTG TCTCTGACCC CTTTGGGACT TCTTAAAGCA
  CAATGATCTT CGCAAAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	PWD/PhJ
ss60528495	NES16547965	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	PWD/PhJ
rs49299603					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60528495	NES16547965	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:9230547 () rs orientation: forward

Symbol	Name	Function Class
D17Mit225	DNA Segment, Chr 17, Massachusetts Institute of Technology 225	1099 bp distal
Rr521842	regulatory region 521842	1829 bp distal