rs49299813 SNP Detail

Summary

• ID
  rs49299813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82961522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCACCTGA AACTGGACTC CAGGATGATT TGGCGGGAAT
  GGGCCCCTTC CCCCTCCTTC ATAAAATTGA GCTTTGCTCA GAACCTGGTT GTCTTAGCTC
  Y
  GTTCTTTTTC TTGTCCGTCT AGTTCCTTTT CTTTCAGCTC CAGTCTGCCA TCTCAGCCAT
  ACCCGTTCCT CGCGAGCCGC TGGACGGCAC GCAACACTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132466470	ENSMUSSNP4173326	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49299813					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82961522 () rs orientation: forward

Symbol	Name	Function Class
Slfn2	schlafen 2	18 bp downstream
Tssr103643	transcription start site region 103643	1400 bp downstream
Tssr103644	transcription start site region 103644	1347 bp downstream
Tssr103645	transcription start site region 103645	1176 bp downstream
Tssr103646	transcription start site region 103646	1102 bp downstream
Tssr103647	transcription start site region 103647	946 bp downstream
Tssr103648	transcription start site region 103648	866 bp downstream
Tssr103649	transcription start site region 103649	818 bp downstream