rs49300087 SNP Detail

Summary

• ID
  rs49300087
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76557402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCAGCTGC CGTGAAATTG CGCCGGTATG TGTGGTCTGT
  GGCAATGATA CTTAGACGTG GCTCCTGAGA ACGCAGGGAA GGAGAGATGA GTGAGTCACC
  W
  CCACAAAGCG ATGCGCCACT GTGAACTGGG TAGTAGTTGT GGAACCCACA CAGGGATACC
  CACGCTCCTC CCTTTGAAGG GCTAGGACTG TCTACTGGGG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61288918	NES16903792	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49300087					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288918	NES16903792	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76557402 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Cpgi1751	CpG island 1751	1774 bp proximal
Tssr94199	transcription start site region 94199	268 bp upstream
Tssr94200	transcription start site region 94200	344 bp upstream
Tssr94201	transcription start site region 94201	1920 bp upstream
Tssr98203	transcription start site region 98203	95 bp upstream
Tssr98204	transcription start site region 98204	398 bp downstream
Tssr98205	transcription start site region 98205	1850 bp downstream
Tssr98206	transcription start site region 98206	1893 bp downstream