rs49300437 SNP Detail

Summary

• ID
  rs49300437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52204811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCCCTTA GAATCTTTGG
  GAATAAGAGA AAAAAAGTGA GAAGGCCACA GCCACTGTTG TTAATGGGAG GGGCGGTGGC
  CCCATCCCAA TCTGGAACAC AAAGCAACAG CTCTTAGAAA CTGTGTAATT AAATTCACGT
  GTGAATTTTG TGCCTTCCAA GAGTATGTTT CTCATTACTT CACTATCCAC AAAAATGCTG
  R
  CCCGAGACAT TTCCATCTTT GTTTTTGCTT TCTTCCTCAG AAATAGTTCA AGGAGACACT
  TTCCAACGCT CTGACAGATT CCCCCAAATA TTAGGCTCTC CACCAGAGAG GGGCTGGGAA
  GCTCCCGGGA TCCACACCCC CTCGCTTGTC GGCAGGAAGA AGAAAGTGGT CAGCGCCAGG
  AACTGGATGT GGCCTGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60886884	NES15969973	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49300437					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886884	NES15969973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52204811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17431	CpG island 17431	1452 bp distal
Cpgi17432	CpG island 17432	1153 bp proximal
Gm57855	predicted gene, 57855	within coordinates
Gm68361	predicted gene, 68361	within coordinates
Hoxa9	homeobox A9	1642 bp upstream
Rr135831	regulatory region 135831	1390 bp proximal
Rr146300	regulatory region 146300	within coordinates
Rr146301	regulatory region 146301	589 bp proximal
Tssr61009	transcription start site region 61009	1967 bp upstream
Tssr61010	transcription start site region 61010	1875 bp upstream
Tssr61011	transcription start site region 61011	1669 bp upstream
Tssr61012	transcription start site region 61012	1635 bp upstream