rs49302236 SNP Detail

Summary

• ID
  rs49302236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141429848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTAATGTC AGAACAGACA
  TCCATCAAAA GTGTTGAAGA TGGCCTGCAA CACATCACTG CAACACAAAT GTCTCCAAAG
  TGCAGGGTTT ACATAAATCT AGAGCCCTTT GGTCTAAACA AGCTTAGTTT GAAAGGCAGG
  AAGCTTAATC CTAATTGAAG TTTAGCCTCT TGGTAAAAGT TAAATGAGCT AATGGCATGC
  Y
  GTTGACTCTG AACACTCCCC AGCTATAGTG AGTAGAGAGG GCCAGACAAA TGAGCATCTA
  TGAGAGATGC CATCCAGGAA GAAATTTCCA ACAAAGCTGA ACTGTCCTAG GAACTTTATC
  ATTAGTGCCT TATTTAATCT TCACAGAAAC TATGCAGTAA CTATTATGTT TATCATTGCT
  TTTTGCATGA AGAAGGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61091315	NES16613474	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		T
ss320994743	CHEV_3_141387051	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49302236					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091315	NES16613474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141429848 () rs orientation: forward

Symbol	Name	Function Class
Unc5c	unc-5 netrin receptor C	within coordinates