rs49304448 SNP Detail

Summary

• ID
  rs49304448
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78430341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTTTTCC AGGACAAGCA
  GGAGAGCCCA TCTCAGTTTT TAGAACGCCT CACAAAGGCC TTATTACAAT ACACTAAGTT
  GTTACTAAGG TAAACAATTT TAGATGACCT ACTTTTTTCC CAGAGCTGCC CCAACATAAA
  AGCTAAACTT AGGCATTTGG CGAGGGGGCC TCTAACTCCA TAGGCGGAAG TCTTGGCGAT
  R
  GCCTTCAAGG TGTACCATGA GAGAGATGAG AAAGCCCAAA AACAAAAACA CTGCAAGCTG
  GCAAAGGCTG TCCGACCAGC TCTAGCTACT ACCCCGAACT CCTGGCCTTC TAAGGTTCAG
  GGACCACTAG CCCCTTGCTA TAGATGTGGT CAGCAAGGTC ATTGGGTGAG GTTTTGCCCT
  ACGCCCCACA AGCCAAGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136668107	ENSMUSSNP5542626	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss323016428	CHEV_9_78370866	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49304448					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78430341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22070	CpG island 22070	1937 bp distal
Gm47430	predicted gene, 47430	902 bp downstream
Gm69163	predicted gene, 69163	1960 bp upstream
Rr383643	regulatory region 383643	1384 bp upstream