rs49304451 SNP Detail

Summary

• ID
  rs49304451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:62141742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCAGCAG AATTTTTCTT
  ACTTTATATA TTTCTCCCTT CTTCACACTC CACGGAGTAT TTACAGTGTG TCTGCACTTT
  GCTCTCTCTA GAGCTGTCTC ACTCAATTGC CGAAGCTTCT CCCTTACACC ATGTAACAAG
  TCCTTTGTGT CACACTTGGA TCCTTTCTTT CTGAATTACA ATTTGCCTCT TTATGATGCT
  Y
  GTATGCATTC TGACATGACA GACTTTCCTT TTTATTTTAT TTTATTTTTT ATTCTTGGTT
  TCTGTATGGA TTTCTCCTGC CTTTGTACCA AGGCAGCACT TTTTAGCCCA TTTACTGTGA
  AAGGTAGATG ACTGCCTGTC TCCTCTCCCA AAACCCCCTC TGCACTTTTC CTTCTACCTT
  CCTAACTTGC CCTCTCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60476144	NES16455398	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49304451					SNP	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60476144	NES16455398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:62141742 () rs orientation: forward

Symbol	Name	Function Class
Rr318921	regulatory region 318921	1459 bp proximal