rs49304812 SNP Detail

Summary

• ID
  rs49304812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:89584312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGCTCT GGGGGTACTG
  GTTAATTCAT ATTGTTGTTC CACCTATCCC GTTGCAGACC CCTTCAGCTC CTTGGATACT
  TTCTGACACC TTGTTTCTGA TCTACAGAGG CAGAATGACA TCTTGTTTCT GATTGCCCTG
  TTGTTTTGCC CAGTTCTTCT GTTACTCCTA TGGCCAGTGG ATTCTTCATC CTGTGACCTT
  Y
  CTGCTTCACT TCTGCCTCCA TCTCCCAAAT GCTAGGATTA CAGGCACCTA TTGGTGTACC
  TGTACCTGGC TTTCTGGTTT TTTTTTTTTG TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG
  TTAATTTATT TTAGTTGTAT TTAAAATATA ATTACATACT TTCCTCCTCC TTTTCTTCCT
  GGAAACCTCT CCCATGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61194603	NES16707718	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49304812					SNP	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194603	NES16707718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89584312 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	within coordinates
Gm72766	predicted gene, 72766	within coordinates
Tssr51704	transcription start site region 51704	1795 bp upstream
Tssr51705	transcription start site region 51705	1396 bp upstream
Tssr51706	transcription start site region 51706	865 bp upstream
Tssr51707	transcription start site region 51707	805 bp upstream
Tssr51708	transcription start site region 51708	1812 bp downstream
Tssr51709	transcription start site region 51709	1989 bp downstream