rs49305412 SNP Detail

Summary

• ID
  rs49305412
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72570347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC GCGGCCAGCG TCGGATGTGG
  G
  AAGTTCACAC TTTGTTTCCA GGCCT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323002777	CHEV_9_72510872	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49305412					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72570347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22018	CpG island 22018	within coordinates
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	within coordinates
Rr682797	regulatory region 682797	573 bp distal
Rr682798	regulatory region 682798	1759 bp proximal
Rr682799	regulatory region 682799	1796 bp proximal
Tssr86018	transcription start site region 86018	1053 bp downstream
Tssr86019	transcription start site region 86019	653 bp downstream
Tssr86020	transcription start site region 86020	597 bp downstream
Tssr86021	transcription start site region 86021	542 bp downstream
Tssr86022	transcription start site region 86022	690 bp upstream
Tssr90495	transcription start site region 90495	185 bp downstream
Tssr90496	transcription start site region 90496	221 bp downstream
Tssr90497	transcription start site region 90497	239 bp downstream