rs49305958 SNP Detail

Summary

• ID
  rs49305958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69017200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAGACA CTCACGACAG
  ACAGGGGTGT GGATGTGTCA CTTGAAATGG AAGCATCTGC TTGAATCCCA GAAGACATTC
  AGACACTTTC CGGCATCACG GGAATCAGAG ATGAGTAAGG GTAACAGCCC CAATTCTCAC
  TGTTAGAGTA GAGGTGTGGA GACCAGTTAG GTTAAATCGA TGGGGGATTT CACAGGCGTG
  Y
  TTATTCTGAG ACTTGAGGAA CATGGAAGAT GAGGTACAGT TCCACAAAAG GAAGCTCACT
  CTGGAAGCTG CATACTCCAA ATCTTGGAAG AAAACAAATA CCTATGCTGA GTAAGAAGAT
  GACAGCAGTG ACTGCTCAAA GACTGTGTAG GGTGATGCCT GTTCTACTTG ATGTGAAAGT
  AAAATTGATA GCTAGTATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52647685	NES15469366	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49305958					SNP	C	C	C	C	T	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52647685	NES15469366	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69017200 () rs orientation: forward

Symbol	Name	Function Class
Adcy2	adenylate cyclase 2	within coordinates
Rr277015	regulatory region 277015	400 bp distal
Rr280122	regulatory region 280122	1174 bp proximal