rs49306180 SNP Detail

Summary

• ID
  rs49306180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129059972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA AGTGGGAAGT GGAAGTTAGA
  Y
  AAGACCGGAA ATGGTGCAGG GTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144458597	ENSMUSSNP3625889	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321689228	CHEV_5_129488783	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49306180					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129059972 () rs orientation: forward

Symbol	Name	Function Class
Rr109750	regulatory region 109750	772 bp distal
Rr127045	regulatory region 127045	772 bp distal
Rr127046	regulatory region 127046	within coordinates
Stx2	syntaxin 2	1649 bp downstream