rs49306315 SNP Detail

Summary

• ID
  rs49306315
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163436443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTAATGAG ACCATGTCTC
  AAAACCAAAA CCAAACCAAA TCATATGGTA ATAACTACAG TTAGTTCTTG GCAACCACAC
  AGAGATGTGT GTATCTGCTT TTCCTCAGTG TTTCAGGCGA CATGCAGAAT GCATGTTATT
  TCATTATCTT CTCCTTTTCC CTACTATGAT GAACTTTGGG GACCTCCTAT GTAGTTAACA
  K
  AGTGGGTCAG AAAGTGCTTA ATTCAAAGTC ACCAAGCCCT TGGAACCCCC TGTCTCTGCC
  TCCACTGCAC AGGGTTACAG CTGCACACTA CCTCGCCTGG CTTTTGTTTG TTATGTTTGT
  TGTATCGGTG TTTTGCTTGC ATGAGTGTCT GTGCACTGTG CCCATGGAGG CCCAGAGAGG
  ACATCAGAGC CGCTAAAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148206246	ENSMUSSNP340455	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49306315					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163436443 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	53 bp downstream
Rr569427	regulatory region 569427	167 bp distal
Rr569428	regulatory region 569428	507 bp proximal