rs49307482 SNP Detail

Summary

• ID
  rs49307482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116030929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCTCCC TCCCCATGAC
  CTGATGACAT TGTGTGCCTG TGGTCTGTGA CCTTCTCTCT CAGCAGAGTC TGCAGGCAGG
  TAGTGAGGTG ACAGTCCTTT CTGGCCTTCT CTCTGGGAGT TTTTCTTCTC ATCTTTTGTG
  GTTGCGGTTT TTCACTTCTG AGTCCCACGG TGTGTCCTCT GAGCTTCGGA ATGATCCTTG
  Y
  ACTAAAGTTG AACTCACAGC ACCGCTTTCT CTGAAAAGAC TGGTGTGTTG ACTGACTCTC
  TTTCGTTTGA TCAACATTTA TTTAATGTCG GATATTTTTA GTAGAAACGT GACATTAGGC
  AACATACAGT ACTTTCCTTT AAGGAATTTA AGGTGCAGAG AAACATACAG ACTAGTAACC
  AAGAATCCTA TGAAGCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437819	NES15932392	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49307482					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437819	NES15932392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116030929 () rs orientation: forward

Symbol	Name	Function Class
Rr583677	regulatory region 583677	64 bp distal
Rr583678	regulatory region 583678	449 bp proximal