rs49307779 SNP Detail

Summary

• ID
  rs49307779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:139507362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATTTTGC CAGTTTTCCA
  TGGACTGATA GTTTTTTTTT TCTTGGTAAA AAAATCTTTG GAAGGCACAT TTCTTCAAAT
  AATCATGAAA AGGTAAAAGA GGGAAACCCC CGATGCTCCC TGAAGCAGGC CTTACTCTTA
  GTATTGGAAG TGGAACTGTT TCTCAGAAAA ATTTCTGGTT AGCACATCCT AGGAAATTTT
  Y
  GCTAGCATAA GAAAACAAAA CAGTGAAGAT CGGAAGGAGG AAATCAATGT CAGATGGCAG
  GATTATCAAG AGAAAAAAGT GCAAAGGAAC ATACAACACC TTCCTGGAAG TATAGTCAAT
  TACTATCACT TATAATCAGT AAGACCATAG AAATTTAGAG GTCACTTGTG TCTGTCTCCA
  TGCCCTCTAA TTAGGCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61086433	NES16598916	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49307779					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61086433	NES16598916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:139507362 () rs orientation: forward

Symbol	Name	Function Class
Rr586268	regulatory region 586268	1262 bp proximal