rs49307828 SNP Detail

Summary

• ID
  rs49307828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154931878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACCAGCAC AGGGTCTTAC ACACTCTGGA CTCTCTCAGA
  TGTCTTTGCC TCTGGTTATG CTCCTCCTCA TATCTCCAAT AAGCTTTCTC CTCCACAGAA
  R
  CAGTCATGTC CCTTTGGCTT ACCTACCACT ATGACCACCA CCATCATGGT CGGTACCTAT
  CTGTGCTCAC AGGAGACCTT TCCCTCCATG ACTCAGACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145774444	ENSMUSSNP3083423	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49307828					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154931878 () rs orientation: forward

Symbol	Name	Function Class
Gm29282	predicted gene 29282	within coordinates
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	392 bp upstream
Gm71001	predicted gene, 71001	473 bp downstream
Rr372279	regulatory region 372279	within coordinates
Rr420922	regulatory region 420922	1277 bp distal
Rr420923	regulatory region 420923	776 bp distal
Rr420924	regulatory region 420924	15 bp proximal
Rr420925	regulatory region 420925	1662 bp proximal
Tssr247	transcription start site region 247	1352 bp upstream
Tssr9520	transcription start site region 9520	1117 bp downstream
Tssr14327	transcription start site region 14327	1371 bp upstream
Tssr14328	transcription start site region 14328	1321 bp upstream
Tssr14329	transcription start site region 14329	1268 bp upstream
Tssr14330	transcription start site region 14330	947 bp upstream