rs49308242 SNP Detail

Summary

• ID
  rs49308242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12274736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCAAAGGC TGCTAGTGGA
  AGACTGACTT CCAGGCAACT AGGGTGAGGA TCTTATACCC ACACCCACAG TGACACACCC
  ATTCCAAGCA GGTCACACCT ATTCCAAGAA GGCCACACCT TCAGATGGTG CCACTCCCTG
  GTCCAAGTTA TACAAACCAT CACACCACCC ATGAAGAAGT TTCCCTTGAG CTGAGTTACA
  R
  GGACATTTGC TCCCTGCATG ACTGCGAGCT GAGCAGTGTT GGGAGGGCAT CCAGGAGGTG
  GAGGAGGAAT GTTGCCAGCG GTGGCACCAG CTCCAAATCT GGCACCTGCA TCATGCCCTC
  CTTCCACCAA CACTGCTGAG CCAGGTGAAT AGTTGGGACC AACTGCATAA TAAGCCATGG
  GTATTGTGGA ACCTAGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61743559	NES17669070	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49308242					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61743559	NES17669070	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12274736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5274	CpG island 5274	1512 bp distal
Gm47021	predicted gene, 47021	within coordinates
Mtr	5-methyltetrahydrofolate-homocysteine methyltransferase	1737 bp upstream
Rr270765	regulatory region 270765	1665 bp proximal
Rr281008	regulatory region 281008	1335 bp distal
Rr387989	regulatory region 387989	within coordinates
Rr403567	regulatory region 403567	1519 bp downstream
Tssr121431	transcription start site region 121431	1788 bp upstream
Tssr121432	transcription start site region 121432	1716 bp upstream
Tssr121433	transcription start site region 121433	1665 bp upstream
Tssr121434	transcription start site region 121434	313 bp downstream