rs49309977 SNP Detail

Summary

• ID
  rs49309977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32878080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTGTGCA GCTGGCTTAC
  TAAACCTCCT TTCTTGGCCT CATGCCCAGG CCAGGAGGAA ACTGTCAGAT CTGGGAAGGT
  TTGGCTGGCA CACATGAGCC CAGCCTTCCA TTGCTTCCTT TAGGCACTTA TCCAAAGAGG
  CCCCAGAAGA AAGAGATTGA GGTGCTGCAG AAGAATCGCC ACTCCTGAGA GAAGGTGCCA
  R
  GCTAGGGAAA GTGGAGCTCC AGGGTACTAT CCTGGTTTGA GAGAGCCCTG ATCATGTCTG
  GTGTGGTGTT GGGGAGCCAG AAGCAGGATG ATCACAGTGA TCAAGCTTGT CCTGGAGACA
  CTGTGGTTTC TGGGTAACAA CTCCAGGAAA GCTTGGTCTC ATGCATGCAG TTTGGGACAC
  TCTTCATATT CTTATTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62679590	NES17313156	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49309977					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679590	NES17313156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32878080 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	within coordinates
Gm65897	predicted gene, 65897	425 bp upstream
Rr525786	regulatory region 525786	436 bp distal
Rr525787	regulatory region 525787	196 bp distal
Rr525788	regulatory region 525788	within coordinates
Tssr143725	transcription start site region 143725	193 bp downstream
Tssr143726	transcription start site region 143726	129 bp downstream
Tssr143727	transcription start site region 143727	104 bp downstream
Tssr143728	transcription start site region 143728	86 bp downstream
Tssr143729	transcription start site region 143729	65 bp downstream
Tssr143730	transcription start site region 143730	48 bp downstream
Tssr143731	transcription start site region 143731	27 bp downstream
Tssr143732	transcription start site region 143732	15 bp downstream