rs49310338 SNP Detail

Summary

• ID
  rs49310338
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70934360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT ACAAGACCAC CCAATTCAGG
  K
  AGAGATGGGA TATGTAGTCC TTAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146739012	ENSMUSSNP345307	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320335442	CHEV_2_70942073	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49310338					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70934360 () rs orientation: forward

Symbol	Name	Function Class
Rr397033	regulatory region 397033	371 bp downstream
Rr558671	regulatory region 558671	396 bp distal
Rr558672	regulatory region 558672	440 bp proximal
Rr558673	regulatory region 558673	742 bp proximal