rs49311359 SNP Detail

Summary

• ID
  rs49311359
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52235424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTCCAG AAGCTCCTTA
  CCCACCCAGG GTTCTCTTGT AACCTCAAGG GTTTAGCTGG CCAGATTTAC TATCAAAACA
  ATAGATCCTT GGATGAGCGT TCTCTCTCCT CTCATCTCCC TTTTTAGCAA TAGTTCAAAT
  AAACAATTCA GTGCCTTTCC CCCTTCTAAG CCTCTACCTG AAACATTTCC AGAAGGAACA
  M
  TGGCAGGGAT TTCAATAAGG TTTACCTGAG CAGGCACTTA ACATGCAAAG GGGAGGGTGC
  TGGACCAGCT GCGTGGAAAC AGCCTTTGTT TCTGTAACCA GTTTTCAGAT TACCATCTAA
  CACAGTGTCC TAAAATATAA TGGTCACATA AATACTTACA AGATTTGAGA AAATTCATAA
  TTTATCTGAA ATTGTGTGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133191182	ENSMUSSNP1694673	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49311359					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52235424 () rs orientation: forward

Symbol	Name	Function Class
9530018H14Rik	RIKEN cDNA 9530018H14 gene	984 bp upstream
Cpgi17439	CpG island 17439	1121 bp proximal
Hoxa13	homeobox A13	409 bp downstream
Rr630395	regulatory region 630395	851 bp distal
Rr630396	regulatory region 630396	1306 bp distal