rs49311634 SNP Detail

Summary

• ID
  rs49311634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:145746232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTATGG ACCGGAAGGT
  TTAGGTAACA GAAGGGAAGA AACTCTGGGA TGATGGACAT TTCAAAGAGG GGATGAACCT
  TGATGAAGGA AATTTGGCAA GGAGGAAACT CTGGAGAAGG CTGCAGGAAA ATGGAGTGTG
  AAGCAGGGTA GGCCTTTGCT TCAGGTGAAG CCAGGTTTAA TTATCGTGTT TAATTGGTTC
  R
  GATCCGATCT TGTGAGATTT CGGTTAGGTC CCGCTTGTGT TGAATCCTCT GTGCATTTTA
  GTACTTGTGG CAGGCGCTCA TGTAATAATA GGCCCTTAAA TCTTCACAAA TTCTGTCATG
  TGCTGATGTC CTCAGTTTCT GGGTGAGGGA AGGGATTGCA CACACAGAAC CCTGACGTGG
  AGTAGGTGGA GACTGGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147849418	ENSMUSSNP5576867	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320538614	CHEV_2_145730048	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49311634					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145746232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12364	CpG island 12364	655 bp distal
Gm74898	predicted gene, 74898	1107 bp upstream
Naa20	N(alpha)-acetyltransferase 20, NatB catalytic subunit	within coordinates
Rr39036	regulatory region 39036	1569 bp proximal
Rr55740	regulatory region 55740	within coordinates
Rr397366	regulatory region 397366	979 bp downstream
Tssr20600	transcription start site region 20600	1085 bp downstream
Tssr20601	transcription start site region 20601	1012 bp downstream
Tssr20602	transcription start site region 20602	409 bp downstream