rs49311970 SNP Detail

Summary

• ID
  rs49311970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46384422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCCCGAC CTCGCCTCGG
  AGGAACTACA ATCCCCAGCA TTCTTTGCCC CAGGGCTTGC GCTCCAAACC GGGTCCCAGC
  CCGATCGGAT TTAGGAGATT GGACAGTGTA TTTCCTACAC ATGGTGGGGT CTGTAGTGTT
  TGTAGATTAA AGAGCCACAG TGTTGATGAT TATCTTGCAT GACTGGATTT GAGATCCCTT
  Y
  GAAGGGGTTT CCAGTACACT CTTAAATTTT GGAGTCTGAA GTACTTGTGA GTAGTTGGGT
  TTGGATTTGT CAGTACTTCA GGGGCGGTTG AATTTTACAG AGTAGTTCTA TCTCTCAGCC
  ATTCCTTCAC TTGGGCAATA CAAACCATTA ATAAACATCT GTCGCTCAGT GGTAGAATGC
  TTGCCCAACA CATATCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60312994	NES15818219	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49311970					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312994	NES15818219	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46384422 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	242 bp upstream
Cpgi11001	CpG island 11001	81 bp distal
Cpgi11002	CpG island 11002	707 bp proximal
Gm59146	predicted gene, 59146	within coordinates
Rr405999	regulatory region 405999	643 bp downstream
Rr406000	regulatory region 406000	within coordinates
Rr406001	regulatory region 406001	643 bp upstream
Rr548727	regulatory region 548727	880 bp distal
Rr548728	regulatory region 548728	256 bp distal
Rr548729	regulatory region 548729	within coordinates
Rr548730	regulatory region 548730	423 bp proximal
Rr548731	regulatory region 548731	758 bp proximal
Rr548732	regulatory region 548732	866 bp proximal
Rr548733	regulatory region 548733	1578 bp proximal
Rr548734	regulatory region 548734	1620 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	913 bp upstream
Tssr156751	transcription start site region 156751	618 bp downstream
Tssr156752	transcription start site region 156752	590 bp downstream
Tssr156753	transcription start site region 156753	902 bp upstream
Tssr156754	transcription start site region 156754	1026 bp upstream
Tssr159650	transcription start site region 159650	227 bp upstream