rs49313524 SNP Detail

Summary

• ID
  rs49313524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85342401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGATCAT CTCTCCAGCC
  CCACCCACAG TCTGCTTTTA AATCTTACTG CTCACACCTT GAACCAGACC AGTGCTCGTT
  TACAGCACTT GGCAGCTGCT TCCTCTCCAC TTTCCCTGTC CTTCCATCAG CTTCCGCTTG
  TAGGCAAGGC TGGTTCCTTA ATGTAAAAAG CTAACACAGA ACCTGGAGAG GTGGCACAGC
  R
  GTTAAGAGCA TCGACTGCTC TTCCAGAGGA GCCAGTTCCC GGCATATACA CTGGGTAGCA
  TACAGCTACC TGTAACTTTG GCCCTAGGGT ATCAGACATT GTCTCTAGCT TCCATTCCCA
  TGCACATATG ACATATATAC ATATGACCAT GAATTCACAT AGATAAAAAT AACTCTTAAA
  AAGTTAGCAT ATACATTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146149198	ENSMUSSNP5860535	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49313524					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85342401 () rs orientation: forward

Symbol	Name	Function Class
Rr343448	regulatory region 343448	401 bp distal
Slc3a1	solute carrier family 3, member 1	within coordinates
Tssr146077	transcription start site region 146077	1338 bp downstream