rs49314172 SNP Detail

Summary

• ID
  rs49314172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:38781663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTTGTGTGT
  GTGTGTGTGT CTTTCATTCA TGTATTCAGA GGGCTCTGGT GAGTGACTGA GTACACGACC
  CACTGGGAGC ACAGAGTAGT TAGCTAAGAT TACCACTACA AGGGACACTT AGGGACATAG
  GGCACCTCTG CTTCGAAGAC AGTGGGAATC AGGATACCCC AGACACATAA ATGGTGTCCT
  R
  AGGAGATATT CCAATAGAAC GGAGGTACTT TTTCTTCTTC TTCTGTTTTT CTTTTTATCC
  TTCCTTCCTT GTTGAATCAG AAATCCTGGC AAGCCAACAG GTTGGAGGGT TACAATGAAG
  TTTCCCTTTA GCTATACTGA ATACTAGTGA TGCCAAGAAA AACTGCTTCC TGTACAGAGA
  CTCAAATAAA AGCTTTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52235613	NES15208543	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49314172					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52235613	NES15208543	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:38781663 () rs orientation: forward

Symbol	Name	Function Class
Gm66419	predicted gene, 66419	929 bp downstream