rs49314268 SNP Detail

Summary

• ID
  rs49314268
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120541516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTGCGCAA TTCATTTCCG GTCAGCACAG
  ACCAGGTCGC AGGCCTGGGG TCACCTCTCT CCTGTACCTG GGTGAAAATC AAACCGTTCG
  GGAGTTCCAT TGAGGCCTCT GAGCGCACCT GTTATCTCCG CAGGGAGCCC CAGATCTATC
  W
  GTTCAGCGCT CTCGCGGCAA GGGCCCTGAC TCTGCTGGGG GTTCTCTGTG AAAAGTCCCC
  CGCGCCACCT CTCCTACGGT TTGGGAGTGA CACTCAGCCA GTCTCCATCC TGCCCGCCTC
  TCCCAGGCTA CTCTTTGTAG GTTTCAGTTT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145318729	ENSMUSSNP1394161	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319933337	CHEV_1_122510364	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49314268					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120541516 () rs orientation: forward

Symbol	Name	Function Class
2610027F03Rik	RIKEN cDNA 2610027F03 gene	570 bp upstream
Cpgi675	CpG island 675	within coordinates
Cpgi676	CpG island 676	517 bp proximal
Gm34352	predicted gene, 34352	within coordinates
Rr417218	regulatory region 417218	within coordinates
Rr417219	regulatory region 417219	630 bp proximal
Rr417220	regulatory region 417220	1667 bp proximal