rs49314430 SNP Detail

Summary

• ID
  rs49314430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:91599029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAATGAGA ACAAGCAGAG
  GGAAAAACAT TCCAGGCAAA GGAAACAGTT AGGGCAAAGG CCCTGGGGCT GGAACCTGGG
  AGGAGGAAGA AGGAACCGAG CCTTTGCAGT TAGCCACACT GGGACTCTGA AAAGCACATC
  TGAAGTCATC CCTGCTCACA TACGATGCCA GGAAACCTCT CCAACCCTTA ACTCTCTGGT
  R
  CTCCTTCTCC TTATTACTGG CATTGTTCTT GCTAAGTAAC TTAAAATTTC CACCTTACAA
  ATTAATTTTA AAAATTGCTT GGCGTATAAG CTGCCAGATA ACAAAAATGC AATAACAGAG
  GTCATCGATA ATAAGTAAAA GATATAGATG ACAGGTTTCA AATCACCTTG GCCACGGCAG
  TGGTGAGGTT TGGAAATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52679087	NES15524240	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49314430					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52679087	NES15524240	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:91599029 () rs orientation: forward

Symbol	Name	Function Class
Rr277507	regulatory region 277507	372 bp proximal
Rr277508	regulatory region 277508	1972 bp proximal