rs49317115 SNP Detail

Summary

• ID
  rs49317115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:42862497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGTAGGT ATGATGTAGA
  CAGAGAACCA CATCTTACAA CTTAGTGGGT GTAGAAGAGG ACCATTGGTT CTGTGAATAA
  GCCTGGTCTA CATTGAAAAT ATCAATTATG AAACCCATCC TACCAAACTT GTCTACACTC
  TTCCTCCACT TCCCACCTCT AAATTGTAAG GGGCAGATAA GAGAGTTTCC AACCATGCCA
  Y
  GATCTGTTTC GAACTTTATT TGTGCTTCTG GTTTGGGACA GATAGGACAG GGGACTTGTC
  CTGGAAATGG TAGGTGTCCT GCTCCTGAGG CCAAGGGGCA AGAGTGAGGG GCTCCAGGAG
  TGGCAGCTGG AAGCATAAAA GCTGGGTTCT GTGGTCCCGA GGCAGCCTCA GGCTAGAGAG
  TCCCCTGGGA TCTTGGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61781878	NES17715489	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49317115					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61781878	NES17715489	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42862497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5506	CpG island 5506	633 bp proximal
Phactr1	phosphatase and actin regulator 1	Intron
Rr478185	regulatory region 478185	34 bp proximal
Rr478186	regulatory region 478186	918 bp proximal
Tssr119461	transcription start site region 119461	307 bp upstream
Tssr119462	transcription start site region 119462	461 bp upstream
Tssr119463	transcription start site region 119463	629 bp upstream