rs49317822 SNP Detail

Summary

• ID
  rs49317822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172040753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA CAGGAAAGGG ACACAGGAAA
  Y
  GAGTCCAGAC CTATTTCCCT ACCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007487	PARCsnp_1.17822	PARC_SEQ	INBRED	f	SNP		T	C
ss120010399	PARCsnp_1.07467	PARC_SEQ	INBRED	f	SNP		T	C
ss146184079	ENSMUSSNP1396980	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320123269	CHEV_1_174143317	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs49317822					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172040753 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr15175	transcription start site region 15175	1164 bp upstream
Tssr15176	transcription start site region 15176	111 bp upstream
Tssr15177	transcription start site region 15177	57 bp upstream
Tssr15178	transcription start site region 15178	24 bp upstream
Tssr15179	transcription start site region 15179	8 bp upstream
Tssr15180	transcription start site region 15180	183 bp downstream
Tssr15181	transcription start site region 15181	759 bp downstream
Tssr15182	transcription start site region 15182	1854 bp downstream