rs49317841 SNP Detail

Summary

• ID
  rs49317841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121506614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAATAGG AAAATGGAAT AAAACGAAGA AAGGAATTTA
  ATTTTTTTCC GGTCTACCAC AGGCTGTGAA TAAATGGTCT CTACAGGATT TCTGGAAGCC
  R
  TTCCATTTTT GGTTTTGTTG TTGTTGTTGT TGTTGTTGTT GTTGTATGTT GTTGTTTGTG
  TGACAAAGGC GCGTTTACTA GTTTTGAAAG TCTGAGTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss135727272	ENSMUSSNP5138871	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320905050	CHEV_3_121415883	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49317841					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121506614 () rs orientation: forward

Symbol	Name	Function Class
Gm43607	predicted gene 43607	519 bp upstream
Rr584146	regulatory region 584146	183 bp proximal