rs49318398 SNP Detail

Summary

• ID
  rs49318398
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34709483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAG TTTAAAAGGA AAAACAATAT
  M
  ATTTATGTTC GTTTCATCAT CATGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60385753	NES15886439	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49318398					SNP	A	A	A	A	A	A	A	A	C	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60385753	NES15886439	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34709483 () rs orientation: forward

Symbol	Name	Function Class
Rr439	regulatory region 439	1250 bp distal
Rr366704	regulatory region 366704	within coordinates
Rr575170	regulatory region 575170	770 bp distal
Rr575171	regulatory region 575171	212 bp proximal
Sox2ot	SOX2 overlapping transcript (non-protein coding)	within coordinates
Tssr28828	transcription start site region 28828	1741 bp downstream
Tssr32982	transcription start site region 32982	1326 bp upstream