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rs49318872 SNP Detail
Summary
  • ID
    rs49318872
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr12:119908033 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TGTTCCTTTA AAACTCCTAT ATGGTTAACA TCAAATGAGT
    GTTCACTATA ATTCTCTCCC AGGGTAATTC TTTTCCACAG AAAACTACAC TAATACCTTT
    K
    GATGATCATA ACTTGTTTTC TTCCTCCAAA AGAATAAAAA ATAGAAAGAC AAAACAAAGT
    AGCTAAATTC AAACCAGAAG TGAAGTAGCA TAGATGTCT                       
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
ss61734983 NES17669792 PERLEGEN MM_PANEL2 f SNP G G T T G T G T T T G T T
ss138915061 ENSMUSSNP886900 ENSEMBL ENSEMBL_Sanger f SNP T G
ss324207695 CHEV_12_121182771 CHEVERUD SCREENING_POP f SNP G T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
rs49318872 SNP G T G T T G T G T T G T G T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61734983 NES17669792 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:119908033 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi5238 CpG island 5238 1568 bp proximal
Rr474318 regulatory region 474318 1172 bp proximal
Tmem196 transmembrane protein 196 1524 bp upstream
Tssr115576 transcription start site region 115576 1806 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory