rs49320005 SNP Detail

Summary

• ID
  rs49320005
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63329927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAA TCAACTCGTG CGCTCCCTAT
  R
  TCCAGCTACC TCACTGCACA CCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146443808	ENSMUSSNP1056157	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49320005					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63329927 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	814 bp distal
Gm57078	predicted gene, 57078	907 bp upstream
Rr398307	regulatory region 398307	1273 bp downstream
Rr398308	regulatory region 398308	752 bp downstream
Rr593545	regulatory region 593545	486 bp distal
Tssr42046	transcription start site region 42046	1686 bp upstream
Tssr42047	transcription start site region 42047	1666 bp upstream
Tssr42048	transcription start site region 42048	1478 bp upstream
Tssr42049	transcription start site region 42049	1459 bp upstream
Tssr42050	transcription start site region 42050	988 bp upstream
Tssr42051	transcription start site region 42051	964 bp upstream
Tssr42052	transcription start site region 42052	933 bp upstream