rs49320134 SNP Detail

Summary

• ID
  rs49320134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89283218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCAGTC CCCCACTCCC
  CACAATTCCT CGTGTTTAAC TAGCAGGCTC AACGTTTTTC AGCCTAATAG TATGACCTCA
  TTTGATTATT GTAAAAAGTT TCAAAACCAC TGGATTTGAA TTAATATTTA AGCTCTCATA
  AATGCTTGCT AAGCTATTAC TGCAAATAAA ATGTGAGAAT AGTCCTCATG CAGGAAGTTC
  Y
  CAAAAAATGT TAGTAGTTTC TCTGATTCAG GATGGTGAAA TTCCAATGAC ACAACTTCTA
  TGGAAAATGC TATGTTAAAG GGTGAGGCCA ACTGTGCAGT GCTGTTTCCT ACAGCATCAA
  CTGAAACTAA GGAAAATGTC TGTGTGCTCA GATTCACTTG TCACACTGAC CCCCTACTCT
  CCAAAGAGAC CTTGAGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61033123	NES16094204	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49320134					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61033123	NES16094204	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89283218 () rs orientation: forward

Symbol	Name	Function Class
A230065N10Rik	RIKEN cDNA A230065N10 gene	886 bp upstream
Cpgi19393	CpG island 19393	723 bp distal
Me3	malic enzyme 3, NADP(+)-dependent, mitochondrial	within coordinates
Rr650822	regulatory region 650822	1297 bp distal
Rr650823	regulatory region 650823	602 bp distal
Tssr67672	transcription start site region 67672	1596 bp downstream
Tssr67673	transcription start site region 67673	1560 bp downstream
Tssr67674	transcription start site region 67674	1518 bp downstream
Tssr67675	transcription start site region 67675	1468 bp downstream
Tssr67676	transcription start site region 67676	1443 bp downstream
Tssr67677	transcription start site region 67677	1279 bp downstream
Tssr67678	transcription start site region 67678	1098 bp downstream
Tssr67679	transcription start site region 67679	1017 bp downstream
Tssr67680	transcription start site region 67680	988 bp downstream