rs49320172 SNP Detail

Summary

• ID
  rs49320172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43878874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCACAC AGCACCACAG
  CTCCGTGGGT GCGAGCGATG ACTCATTAAA GCCGCAATCC TGGAGCTCTC TGCACTTTTG
  TATACATCCT GGCAATCCAA ATCTCTCCTT TGTTCTTCAG TCCTTAGAAT CTCCAACCCC
  CCACCCCGCC CCCACCCCCG CCCCGCCCCC CGTTGTTTAC ACTTTTTATA CCGCTGAGAA
  R
  GAGCCCTCAA GAATCTTCCA AATTTCTGCT CCTATAGAGA ACCTTTCACA TCTCCACCTC
  CACCCCCACG CCCTTGGAGA GGATGTTTGT ATTTGCATGG AAATGTTTTT ACAGCAATCA
  TTAATAGCCT AGTCAGACTG AGCTATGAGA CGGACTCTTC AATCACTCTG TTCCTCATAA
  TCGCAAAGTA AGAAAGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62747684	NES17340455	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49320172					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747684	NES17340455	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43878874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	340 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	135 bp upstream
Rr527121	regulatory region 527121	within coordinates
Rr527122	regulatory region 527122	297 bp proximal
Tssr144685	transcription start site region 144685	4 bp upstream
Tssr144686	transcription start site region 144686	113 bp upstream
Tssr144687	transcription start site region 144687	169 bp upstream
Tssr144688	transcription start site region 144688	307 bp upstream
Tssr144689	transcription start site region 144689	464 bp upstream
Tssr144690	transcription start site region 144690	499 bp upstream
Tssr144691	transcription start site region 144691	519 bp upstream
Tssr144692	transcription start site region 144692	575 bp upstream
Tssr144693	transcription start site region 144693	623 bp upstream
Tssr144694	transcription start site region 144694	658 bp upstream
Tssr144695	transcription start site region 144695	706 bp upstream
Tssr144696	transcription start site region 144696	723 bp upstream
Tssr144697	transcription start site region 144697	1413 bp upstream
Tssr148130	transcription start site region 148130	521 bp downstream
Tssr148131	transcription start site region 148131	1965 bp downstream
Tssr148132	transcription start site region 148132	1988 bp downstream