rs49321727 SNP Detail

Summary

• ID
  rs49321727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126573203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAAGCAT CTCCCCACTC
  AGTTTCTTAA ACTCCATGAG GAAGTCCAGG GAAATTGAAA GCTCTGTCTC AATGCTTATT
  TTCAAAGTTC TAGTATTGGT TGGGAAGCAA TGGTGTAGAC ACAGCCTCAT TCCAAGACTG
  ATTTATCAGT CCTTGAGTAA TGATCGATAC CAAAGAAAAA TGTGTCTAAC TCACAGTATT
  Y
  TAGGTGGGAG AATAAATTAT CTGTGTAACA TTTTAGTCAC ACTTTAGAGG AATGTAAATT
  ACATAGTAAA AAAATGGCTT ATAATTTTTT TTAAGCTAGC TGTAACATTT GGCAAACAAT
  ATACTCTTTC TTGCCTTTAA GAACAAACAG ATTCTTAAAG ACAGCCATTT TGATACACAA
  TTCAGAATCA GTCTCCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135841049	ENSMUSSNP1920979	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320948051	CHEV_3_126482472	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49321727					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126573203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			808 bp upstream
Tssr31580	transcription start site region 31580			843 bp upstream
Tssr31581	transcription start site region 31581			854 bp upstream