rs49322027 SNP Detail

Summary

• ID
  rs49322027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44388314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCTGAG TTCCACAGAA
  GTCAAGATGA TGCTTCCTGG TCATGCTTAG CTCAAGGATC TTTCCTGGGA GCAGCCTAAG
  TCACCCTCAT ACTGAATTGT AATTGTCAGC ATCTTGTCTG CCCCTAGCTA GACTGTTGGC
  TGTGTAAAGA CAAGGGACCA TACCTGTCAT ATCACCAATA TAAATCTAGT GTCCAGTCCA
  R
  TGCTTGGAAA ATAGTAGGTC TTCAGTAAAT ATTTATTGAA TGACTAAGAA GGAAGGGTTA
  GTCAGAAAAG GAGTCCAAAA GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG
  AAGAAGAAGA AGAAGACGAC GACGACGACT GAGTTATCAA AACTCACAAG AAGAGCTGGC
  TATGATGGCG GAAGCCAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136396123	ENSMUSSNP1676397	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49322027					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44388314 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1423 bp proximal
Gm10023	predicted gene 10023	907 bp downstream
Gm22540	predicted gene, 22540	502 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	714 bp distal
Rr203857	regulatory region 203857	748 bp distal
Rr206312	regulatory region 206312	486 bp proximal
Rr209143	regulatory region 209143	within coordinates