rs49322707 SNP Detail

Summary

• ID
  rs49322707
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74592902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCATTGT TTGTTTTCCT
  GGCAAAGTTC CCCAGCTGCT CCGCAGAAGT TCTGGAATTC TTTGGCTATG CTCATCTGAG
  CTACTGACTG GATCACTAGC GGGAGCAGGC TTCCTTGTCA CTCTTGCACC TGCAGGGCCG
  AGCGCCGTAG CCAGGTGGCG CTGTACTGCT CGGAGCGTCC CGCCGTGACC CGCCCCGCCC
  C
  GAGAAAAGCG AAAGCCGCTA ACGCAGAGGA CCCAGACTAG GCCATCGAGG ACGCGCGCAG
  GGGGGAACCA GTATCTGTGC GAGCTACTCC AGCTCACGGC GCCGCTGCCT CTGGAGTACT
  CCCCCTCGGA CTGCTGGAAG AGTTGGTGCG CTCCAGTCCT CGGAGCTCCC AGGCTTCAGG
  GCCGGCCGGC AGCAGGCAAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148149553	ENSMUSSNP4319580	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49322707					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74592902 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7176	CpG island 7176	within coordinates
Them6	thioesterase superfamily member 6	181 bp upstream
Tssr131582	transcription start site region 131582	140 bp upstream
Tssr131583	transcription start site region 131583	185 bp upstream
Tssr131584	transcription start site region 131584	509 bp upstream
Tssr131585	transcription start site region 131585	638 bp upstream
Tssr131586	transcription start site region 131586	644 bp upstream