rs49323907 SNP Detail

Summary

• ID
  rs49323907
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20058748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCTTGA GTGCTGGAAC
  TGAACTCCCA TCCCATGGAA GAGCAGTGCA CTCTCTTAAT CACTGAGCCA CCTCTCCAGC
  CCTATGGACC TTTTTAGTCC TGAGCTCCCA TCCCACCTTC AAGGAATCTA GACAACAAAA
  TTCCTAAAAT ATTCAAACAC CTGTAATAAA TATGGAGTGG TGTTTTAAAT AGTCCCAAAC
  W
  AGGCATCACA GATGAGACCA AAAAAAAAAG GGGGGGTGGG GGGCTTATGC CTGTGGCTAT
  ATGCCTAACA AAGGGCTAAC ATACATTACA GTTATTAACA TTCAGAACAT CTATCTATGG
  TCAAACATTA CATTAAGTTA AAAAAAAAAA AAGTAATGGA GTTATAATGT GTGAGCCTGA
  CAATCCGAGA GATGGATCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52600696	NES15697979	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49323907					SNP	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52600696	NES15697979	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20058748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8068	CpG island 8068	555 bp proximal
Gm49566	predicted gene, 49566	659 bp upstream
Map6d1	MAP6 domain containing 1	within coordinates
Tssr140349	transcription start site region 140349	1266 bp downstream
Tssr140350	transcription start site region 140350	1279 bp downstream
Tssr140351	transcription start site region 140351	1306 bp downstream