rs49324220 SNP Detail

Summary

• ID
  rs49324220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCATTATT TTGCCAGCTT AGACCATTCT CTAAAGGCCT
  TTCCTCTTTG TTCCTAATCA GACATTGGCA TAGACACTTT AAAAAATTTA TTTATCTTTA
  Y
  TTTATGTATG TTGATGTCTT TTGACTGCAT GTATGTCTGT GTGAGGGTGT CAGAGCCTCT
  GGGACTGGGT TTACAGACAA TTGTGAGTTG CCACATGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146037798	ENSMUSSNP2020911	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49324220					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199275 () rs orientation: forward

Symbol	Name	Function Class
Mgst3	microsomal glutathione S-transferase 3	260 bp downstream
Rr396523	regulatory region 396523	1503 bp downstream
Rr422697	regulatory region 422697	1694 bp distal
Rr422698	regulatory region 422698	1621 bp distal
Rr422699	regulatory region 422699	1564 bp distal
Rr422700	regulatory region 422700	1014 bp distal
Rr422701	regulatory region 422701	1270 bp distal
Tssr14852	transcription start site region 14852	711 bp downstream
Tssr14853	transcription start site region 14853	1815 bp downstream