rs49325163 SNP Detail

Summary

• ID
  rs49325163
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99090464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGAGTG TCTGGATTCA
  TCTATCTGTT CTCTGCATGA GCTGTGGATA GACTTGAATA AATACTAGCT TGCAAACTTA
  GTTGCAAATG CTGCTGAGAA AACTGGGAAA TGTGTTAGGA TTTCATTTAC ATCCAAGCTG
  CAATCTCAGA AGTGTGTAGG TATTCCTATT TGCAAATCCC AAACTAGGTT TGATGTTTTT
  K
  ATTTACTAAC TTTATATGCT TTAAAAACAT CTCCAAAGGT GGGACAGGGG CACAGCAGTG
  CATTGGAGTT TGGGCCAAAC AAAACAAAGC TCTAGAAGTC TCCAATGTTT CTCTGAAAAT
  TGATGTTTTC GATAGTAAGT CAAAGGCTGA AATAATTTAA AAGAAGACTG GAAAAGTACA
  TTTTCTTAAA GACTACGAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61200734	NES16706834	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49325163					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61200734	NES16706834	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99090464 () rs orientation: forward

Symbol	Name	Function Class
Prkg2	protein kinase, cGMP-dependent, type II	within coordinates
Rr615191	regulatory region 615191	1379 bp distal
Tssr52014	transcription start site region 52014	1158 bp downstream
Tssr52015	transcription start site region 52015	1181 bp downstream
Tssr52016	transcription start site region 52016	1217 bp downstream
Tssr52017	transcription start site region 52017	1272 bp downstream