rs49326081 SNP Detail

Summary

• ID
  rs49326081
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103911255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAAGGGAGG GCAAAGGAAG AATATGAATG TGCTTACAGT
  ATATTGTAGG CAAGTATGAA ATTGTCAAAC TTTTAATTAA AAGATAAAAA TGAGAAAGCT
  S
  ACCTGGACCT GTGCTCACTG ATGGTGGTGA GGTCTGCCAG GGTCTAAGAC ACTGCTGGTT
  TTAACAGAAT CTCTTTCTGA TTCTAGCTGT TAGCCTCAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63330840	NES17510228	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	C	G	C	G		C	G		C
ss147142887	ENSMUSSNP2540150	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss320443670	CHEV_2_103921067	CHEVERUD	SCREENING_POP	f	SNP												G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49326081					SNP	G	G	G	G	G	G	G	C	G	C	G	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63330840	NES17510228	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103911255 () rs orientation: forward

Symbol	Name	Function Class
Cd59b	CD59b antigen	Intron
Rr562020	regulatory region 562020	1786 bp distal
Rr562021	regulatory region 562021	619 bp proximal
Rr562022	regulatory region 562022	1641 bp proximal